2019
Márquez-Corro JI, Martin-Bravo S, Spalink D, Luceño M, Escudero M. 2019. Inferring hypothesis-based transitions in clade-specific models of chromosome number evolution in sedges (Cyperaceae). Molecular Phylogenetics and Evolution, 135, 203-209.
Alyamani EJ, Marcus SA, Ramirez-Busby SM, Hansen C, Rashid J, El-kholy A, Spalink D, Valafar F, Almehdar HA, Fatani AJ, Khiyami MA, Talaat AM. 2019. Transmission dynamics of Mycobacterium tuberculosis in The Middle East. Scientific Reports, 9: 4474.
Spalink D, MacKay R, Sytsma KJ. 2019. Phylogeography, population genetics, and distribution modeling reveal vulnerability of Scirpus longii (Cyperaceae) and the Atlantic Coastal Plain Flora to climate change. Molecular Ecology: mec.15006.
2018
Spalink D, Kriebel R, Li P, Pace MC, Drew BT, Zaborsky JG, Rose J, Drummond C, Feist MA, Alverson B, Waller D, Cameron KM, Givnish TJ, Sytsma KJ. 2018. High-resolution spatial phylogenetics reveals evolutionary constraints on the assembly and future migration of a regional vascular flora. American Journal of Botany, 105(11), 1-13.
Givnish TJ, Zuluaga A, Spalink D, Soto Gomez M, Lam VKY, Saarela JM, Sass C, Iles WJD, Lima de Sousa, DJ, Leebens-Mack J, Pires JC, Zomlefer WB, Gandolfo MA, Davis JI, Stevenson DW, dePamphilis C, Specht C, Graham SW, Barrett CF, Ane C. 2018. Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi-gene analyses, and a functional model for the origin of monocots. American Journal of Botany, 105(11), 1-23.
Spalink D, Pender J, Escudero M, Hipp A, Roalson E, Starr JR, Waterway M, Bohs L, Sytsma KJ. 2018. The spatial structure of phylogenetic and functional diversity in North America: an example using the sedge family (Cyperaceae). Journal of Systematics and Evolution, 56(5), 449-465.
Spalink D, K Stoffel, GK Walden, AM Hulse-Kemp, T Hill, A Van Deynze, L Bohs. 2018. Comparative transcriptomics and genomic patterns of discordance in Capsiceae (Solanaceae). Molecular Phylogenetics and Evolution,126, 293-302.
Kitanovic K, Orr T, Spalink D, Cocke G, Schramm K, Ross W, Halpert J, Dearing D. 2018. Role of Cytochrome P450 2B sequence variation and gene copy number in facilitating dietary specialization in mammalian herbivores. Molecular Ecology, 27(3), 723-736.
2016
Spalink D,Drew BT, Pace MC, Zaborsky JG, Cameron KM, Starr JR, Sytsma KJ. 2016. Biogeography of the cosmopolitan sedges (Cyperaceae) and the area-richness correlation in plants. Journal of Biogeography, 43(10), 1893-1904.
Spalink D,Drew BT, Pace MC, Zaborsky JG, Li P, Cameron KM, Givnish TJ, Sytsma KJ. 2016. Evolution of place and niche space: geographical diversification of the North American sedge flora (Cyperaceae). Molecular Phylogenetics and Evolution, 95, 183-195.
Givnish TJ, SpalinkD, Ames M, Lyon SP, Hunter SJ, Zuluaga A, Doucette A, Caro G, McDaniel J, Clements M, Arroyo MTK, Endara L, Kriebel R, Williams N, Cameron KM. 2016. Orchid historical biogeography, diversification, Antarctica, and the paradox of orchid dispersal. Journal of Biogeography, 43(10), 1905-1916.
Givnish TJ, Zuluaga A, Marques I, Lam VKY, Gomez MS, Iles WJD, Ames M, Spalink D, Moeller J, Briggs BG, Lyon SP, Stevenson DW, Zomlefer W, Graham SW. 2016. Phylogenomics and historical biogeography of the monocot order Liliales: out of Australia and through Antarctica. Cladistics, 32(6), 581-605.
Kartzinel RY,Spalink D, Waller DM,Givnish TJ. 2016. Divergence and isolation of cryptic sympatric taxa within the annual legume Amphicarpaea bracteata. Ecology and Evolution, 6(10), 3367-3379.
Berger B, Kriebel R, Spalink D, Sytsma KJ. 2016. Divergence times, shifts in speciation rates, and historical biogeography of Myrtales. Molecular Phylogenetics and Evolution, 95, 116-136.
2015
Givnish TJ, Spalink D,Ames M, Lyon S, Hunter S, Zuluaga A, Iles W, Clements M, Arroyo MTK, Leebens-Mack J, Endara L, Kriebel R, Neubig K, Whitten M, Williams NH, Cameron KM. 2015. Orchid phylogenomics and multiple drivers of their extraordinary diversification. Proceedings of the Royal Society of London B, 282(1814), 20151553.
Waterway MJ, Ford KA, Luceño M, Martin-Bravo S, Starr JR, Wilson O, Yano E, Zhang SR,Roalson EH, Alverson WS, Bruederle LP, Bruhl JJ, Chung K-S, Cochrane TS, Escudero M, Ford BA, Gebauer S, Gehrke B, Hahn M, Hipp AL, Hoffmann MH, Hoshino T, Jiménez-Mejias P, Jin X-F, Jung J, Kim S, Maguilla E, Masaki T, Miguez M, Molina A, Naczi RFC, Reznicek AA, Rothrock PE, Simpson D, Spalink D, Thomas WW, Villaverde T. 2015. Making Carexmonophyletic (Cyperaceae, tribe Cariceae): a new broader circumscription. Botanical Journal of the Linnean Society, 179. 1-42.
2014
Sytsma KJ, Spalink D,Berger B. 2014. Calibrated chronograms, fossils, outgroup relationships, and root priors: re‐examining the historical biogeography of Geraniales. Biological Journal of the Linnean Society, 113(1), 29-49.
Léveillé‐Bourret É, Gilmour CN, Starr JR, Naczi RF, Spalink D, Sytsma KJ. 2014. Searching for the sister to sedges (Carex): resolving relationships in the Cariceae‐Dulichieae‐Scirpeae clade (Cyperaceae). Botanical Journal of the Linnean Society, 176(1), 1-21.
2012
Knight KS, Herms D, Plumb R, Sawyer E, Spalink D, Pisarczyk E, Wiggin B, Kappler R, Menard K. 2012. Dynamics of surviving ash (Fraxinusspp.) populations in areas long infested by emerald ash borer (Agrilus planipennis). In Proceedings of the 4thinternational workshop on the genetics of host-parasite interactions in forestry: disease and insect resistance in forest trees (coord. by Sniezko, R.A., A.D. Yanchuk, J.T. Kliejunas, K.M. Palmieri, J.M. Alexander, S.J. Frankel). U.S. Department of Agriculture, Eugene, OR.